Recognition of Binding Patterns Common to a Set of Protein Structures
A High-Throughput Approach for Associating microRNAs with Their Activity Conditions
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Reconstruction of Reticulate Networks from Gene Trees
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks
Learning Interpretable SVMs for Biological Sequence Classification
The Factor Graph Network Model for Biological Systems
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Motif Discovery Through Predictive Modeling of Gene Regulation
Rapid Protein Side-Chain Packing via Tree Decomposition
Towards an Integrated Protein-Protein Interaction Network
RIBRA - An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem
A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem
Modeling the Combinatorial Functions of Multiple Transcription Factors
Amino Acid Sequence Control of the Folding of the Parallel beta-Helix, the Simplest beta-Sheet Fold
Using Multiple Alignments to Improve Gene Prediction