Using Multiple Alignments to Improve Gene Prediction
EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning
Graph Theoretical Insights into Evolution of Multidomain Proteins
Discovery and Annotation of Genetic Modules
Consensus Folding of Unaligned RNA Sequences Revisited
A Regulatory Network Controlling Drosophila Development
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model
Reconstruction of Reticulate Networks from Gene Trees
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks
Improved Recombination Lower Bounds for Haplotype Data
HAPLOFREQ - Estimating Haplotype Frequencies Efficiently
Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology
Information Theoretic Approaches to Whole Genome Phylogenies
Constructing a Smallest Refining Galled Phylogenetic Network
Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length
Learning Interpretable SVMs for Biological Sequence Classification
The Factor Graph Network Model for Biological Systems
Recognition of Binding Patterns Common to a Set of Protein Structures