Testing models of intra-Golgi cargo protein transport
Learning Interpretable SVMs for Biological Sequence Classification
The Factor Graph Network Model for Biological Systems
Predicting Transcription Factor Binding Sites Using Structural Knowledge
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters
Avoiding Local Optima in Single Particle Reconstruction
Reconstruction of Reticulate Networks from Gene Trees
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks
Maximum Likelihood of Evolutionary Trees Is Hard
RIBRA - An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
Mapping Molecular Landscapes Inside Cells
RNA-RNA Interaction Prediction and Antisense RNA Target Search
The contributions of sea ice algae to Antarctic marine primary production
Graph Theoretical Insights into Evolution of Multidomain Proteins
Discovery and Annotation of Genetic Modules
Consensus Folding of Unaligned RNA Sequences Revisited
A Regulatory Network Controlling Drosophila Development
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model
Recognition of Binding Patterns Common to a Set of Protein Structures
A High-Throughput Approach for Associating microRNAs with Their Activity Conditions
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Improved Recombination Lower Bounds for Haplotype Data
HAPLOFREQ - Estimating Haplotype Frequencies Efficiently
Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology
Information Theoretic Approaches to Whole Genome Phylogenies
Constructing a Smallest Refining Galled Phylogenetic Network
Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length
Human Genome Sequence Variation and the Inherited Basis of Common Disease
A Practical Approach to Significance Assessment in Alignment with Gaps
A Polynomial Time Solvable Formulation of Multiple Sequence Alignment
Yeast Cells as a Discovery Platform for Neurodegenerative Disease
Stability of Rearrangement Measures in the Comparison of Genome Sequences
A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search
Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry
A Hybrid Micro-macroevolutionary Approach to Gene Tree Reconstruction
Motif Discovery Through Predictive Modeling of Gene Regulation
Rapid Protein Side-Chain Packing via Tree Decomposition
Towards an Integrated Protein-Protein Interaction Network
A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem
Modeling the Combinatorial Functions of Multiple Transcription Factors
Amino Acid Sequence Control of the Folding of the Parallel beta-Helix, the Simplest beta-Sheet Fold
Using Multiple Alignments to Improve Gene Prediction
EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning