Using Multiple Alignments to Improve Gene Prediction
EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning
Predicting Transcription Factor Binding Sites Using Structural Knowledge
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters
Avoiding Local Optima in Single Particle Reconstruction
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
Mapping Molecular Landscapes Inside Cells
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Recognition of Binding Patterns Common to a Set of Protein Structures
A High-Throughput Approach for Associating microRNAs with Their Activity Conditions
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Graph Theoretical Insights into Evolution of Multidomain Proteins
Discovery and Annotation of Genetic Modules
Consensus Folding of Unaligned RNA Sequences Revisited
A Regulatory Network Controlling Drosophila Development
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model
Maximum Likelihood of Evolutionary Trees Is Hard