Reconstruction of Reticulate Networks from Gene Trees
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks
Motif Discovery Through Predictive Modeling of Gene Regulation
Rapid Protein Side-Chain Packing via Tree Decomposition
Towards an Integrated Protein-Protein Interaction Network
Improved Recombination Lower Bounds for Haplotype Data
HAPLOFREQ - Estimating Haplotype Frequencies Efficiently
Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology
Information Theoretic Approaches to Whole Genome Phylogenies
Constructing a Smallest Refining Galled Phylogenetic Network
Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length
Learning Interpretable SVMs for Biological Sequence Classification
The Factor Graph Network Model for Biological Systems
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
Mapping Molecular Landscapes Inside Cells
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Predicting Transcription Factor Binding Sites Using Structural Knowledge
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters